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Databricks job orchestration systems (e.g., LeJOT) reduce cloud costs by selecting low-priced compute configurations while meeting latency and dependency constraints. Accurate execution-time prediction under heterogeneous instance types and non-stationary runtime conditions is therefore critical. Existing pipelines rely on static, manually engineered features that under-capture runtime effects (e.g., partition pruning, data skew, and shuffle amplification), and predictive signals are scattered across logs, metadata, and job scripts-lengthening update cycles and increasing engineering overhead. We present LeJOT-AutoML, an agent-driven AutoML framework that embeds large language model agents throughout the ML lifecycle. LeJOT-AutoML combines retrieval-augmented generation over a domain knowledge base with a Model Context Protocol toolchain (log parsers, metadata queries, and a read-only SQL sandbox) to analyze job artifacts, synthesize and validate feature-extraction code via safety gates, and train/select predictors. This design materializes runtime-derived features that are difficult to obtain through static analysis alone. On enterprise Databricks workloads, LeJOT-AutoML generates over 200 features and reduces the feature-engineering and evaluation loop from weeks to 20-30 minutes, while maintaining competitive prediction accuracy. Integrated into the LeJOT pipeline, it enables automated continuous model updates and achieves 19.01% cost savings in our deployment setting through improved orchestration.