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arXiv 提交日期: 2026-04-13
📄 Abstract - OpenTME: An Open Dataset of AI-powered H&E Tumor Microenvironment Profiles from TCGA

The tumor microenvironment (TME) plays a central role in cancer progression, treatment response, and patient outcomes, yet large-scale, consistent, and quantitative TME characterization from routine hematoxylin and eosin (H&E)-stained histopathology remains scarce. We introduce OpenTME, an open-access dataset of pre-computed TME profiles derived from 3,634 H&E-stained whole-slide images across five cancer types (bladder, breast, colorectal, liver, and lung cancer) from The Cancer Genome Atlas (TCGA). All outputs were generated using Atlas H&E-TME, an AI-powered application built on the Atlas family of pathology foundation models, which performs tissue quality control, tissue segmentation, cell detection and classification, and spatial neighborhood analysis, yielding over 4,500 quantitative readouts per slide at cell-level resolution. OpenTME is available for non-commercial academic research on Hugging Face. We will continue to expand OpenTME over time and anticipate it will serve as a resource for biomarker discovery, spatial biology research, and the development of computational methods for TME analysis.

顶级标签: medical computer vision data
详细标签: digital pathology tumor microenvironment histopathology dataset cell segmentation 或 搜索:

OpenTME:一个基于TCGA的AI驱动H&E肿瘤微环境图谱开放数据集 / OpenTME: An Open Dataset of AI-powered H&E Tumor Microenvironment Profiles from TCGA


1️⃣ 一句话总结

这篇论文发布了一个名为OpenTME的开放数据集,它利用人工智能技术,从数千张常规癌症病理切片中自动提取并量化了肿瘤微环境的细胞组成和空间结构特征,旨在为癌症研究和生物标志物发现提供大规模、标准化的数据资源。

源自 arXiv: 2604.12075