MacroGuide:用于大环分子生成的拓扑引导方法 / MacroGuide: Topological Guidance for Macrocycle Generation
1️⃣ 一句话总结
这篇论文提出了一种名为MacroGuide的新方法,它利用一种叫做‘持续同调’的数学工具来引导人工智能模型高效生成具有特定环状结构的大环分子,将生成成功率从1%大幅提升至99%,同时保证了分子的质量和多样性。
Macrocycles are ring-shaped molecules that offer a promising alternative to small-molecule drugs due to their enhanced selectivity and binding affinity against difficult targets. Despite their chemical value, they remain underexplored in generative modeling, likely owing to their scarcity in public datasets and the challenges of enforcing topological constraints in standard deep generative models. We introduce MacroGuide: Topological Guidance for Macrocycle Generation, a diffusion guidance mechanism that uses Persistent Homology to steer the sampling of pretrained molecular generative models toward the generation of macrocycles, in both unconditional and conditional (protein pocket) settings. At each denoising step, MacroGuide constructs a Vietoris-Rips complex from atomic positions and promotes ring formation by optimizing persistent homology features. Empirically, applying MacroGuide to pretrained diffusion models increases macrocycle generation rates from 1% to 99%, while matching or exceeding state-of-the-art performance on key quality metrics such as chemical validity, diversity, and PoseBusters checks.
MacroGuide:用于大环分子生成的拓扑引导方法 / MacroGuide: Topological Guidance for Macrocycle Generation
这篇论文提出了一种名为MacroGuide的新方法,它利用一种叫做‘持续同调’的数学工具来引导人工智能模型高效生成具有特定环状结构的大环分子,将生成成功率从1%大幅提升至99%,同时保证了分子的质量和多样性。
源自 arXiv: 2602.14977