AAVGen:用于肾脏选择性靶向的腺相关病毒衣壳的精准工程 / AAVGen: Precision Engineering of Adeno-associated Viral Capsids for Renal Selective Targeting
1️⃣ 一句话总结
这篇论文提出了一个名为AAVGen的人工智能生成框架,它能够从头设计出在产量、肾脏靶向性和热稳定性等多个关键性能上同时得到优化的新型腺相关病毒衣壳,为开发下一代基因治疗载体提供了高效的数据驱动方法。
Adeno-associated viruses (AAVs) are promising vectors for gene therapy, but their native serotypes face limitations in tissue tropism, immune evasion, and production efficiency. Engineering capsids to overcome these hurdles is challenging due to the vast sequence space and the difficulty of simultaneously optimizing multiple functional properties. The complexity also adds when it comes to the kidney, which presents unique anatomical barriers and cellular targets that require precise and efficient vector engineering. Here, we present AAVGen, a generative artificial intelligence framework for de novo design of AAV capsids with enhanced multi-trait profiles. AAVGen integrates a protein language model (PLM) with supervised fine-tuning (SFT) and a reinforcement learning technique termed Group Sequence Policy Optimization (GSPO). The model is guided by a composite reward signal derived from three ESM-2-based regression predictors, each trained to predict a key property: production fitness, kidney tropism, and thermostability. Our results demonstrate that AAVGen produces a diverse library of novel VP1 protein sequences. In silico validations revealed that the majority of the generated variants have superior performance across all three employed indices, indicating successful multi-objective optimization. Furthermore, structural analysis via AlphaFold3 confirms that the generated sequences preserve the canonical capsid folding despite sequence diversification. AAVGen establishes a foundation for data-driven viral vector engineering, accelerating the development of next-generation AAV vectors with tailored functional characteristics.
AAVGen:用于肾脏选择性靶向的腺相关病毒衣壳的精准工程 / AAVGen: Precision Engineering of Adeno-associated Viral Capsids for Renal Selective Targeting
这篇论文提出了一个名为AAVGen的人工智能生成框架,它能够从头设计出在产量、肾脏靶向性和热稳定性等多个关键性能上同时得到优化的新型腺相关病毒衣壳,为开发下一代基因治疗载体提供了高效的数据驱动方法。
源自 arXiv: 2602.18915