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arXiv 提交日期: 2026-04-08
📄 Abstract - VertAX: a differentiable vertex model for learning epithelial tissue mechanics

Epithelial tissues dynamically reshape through local mechanical interactions among cells, a process well captured by vertex models. Yet their many tunable parameters make inference and optimization challenging, motivating computational frameworks that flexibly model and learn tissue mechanics. We introduce VertAX, a differentiable JAX-based framework for vertex-modeling of confluent epithelia. VertAX provides automatic differentiation, GPU acceleration, and end-to-end bilevel optimization for forward simulation, parameter inference, and inverse mechanical design. Users can define arbitrary energy and cost functions in pure Python, enabling seamless integration with machine-learning pipelines. We demonstrate VertAX on three representative tasks: (i) forward modeling of tissue morphogenesis, (ii) mechanical parameter inference, and (iii) inverse design of tissue-scale behaviors. We benchmark three differentiation strategies-automatic differentiation, implicit differentiation, and equilibrium propagation-showing that the latter can approximate gradients using repeated forward, adjoint-free simulations alone, offering a simple route for extending inverse biophysical problems to non-differentiable simulators with limited additional engineering effort.

顶级标签: biology systems model training
详细标签: vertex model differentiable simulation tissue mechanics parameter inference inverse design 或 搜索:

VertAX:一个用于学习上皮组织力学的可微分顶点模型 / VertAX: a differentiable vertex model for learning epithelial tissue mechanics


1️⃣ 一句话总结

这篇论文提出了一个名为VertAX的新型可微分计算框架,它能让研究人员像做机器学习实验一样,通过自动求导和优化技术,轻松地模拟、分析和逆向设计上皮组织的力学行为。

源自 arXiv: 2604.06896